Department of Convergence Medicine · Korea University College of Medicine

Precision Imaging & Magnetic Resonance Engineering Laboratory

PRIME Lab designs the next generation of MRI by integrating pulse sequences and k-space acquisition with physics-informed deep learning for image reconstruction and quantitative analysis. We build a bridge between how MRI signals are acquired and how artificial intelligence extracts meaningful insights from them.

Physics-informed and AI-driven: The future of precision neuroimaging.

FIG. 01 — GRADIENT-ECHO (GRE) SEQUENCE DIAGRAM · 2 REPETITIONS SHOWN RF / Gz / Gy / Gx / ADC
RF Gz Gy Gx ADC t TE TR

What we build

Three layers of one imaging pipeline

An MRI operates as an interconnected chain that spans signal excitation, encoding, reconstruction, and interpretation. PRIME Lab addresses all three layers collectively rather than treating them as isolated problems, allowing improvements in one area to seamlessly enhance the design of the others.

[ 01 · ACQUISITION ]

Pulse Sequence Design

We develop fast, quantitative, and motion-robust acquisition strategies that range from diffusion-weighted sequences to quantitative MRI protocols specifically engineered for downstream machine learning.

[ 02 · RECONSTRUCTION ]

Image Reconstruction

We utilize physics-informed and self-supervised deep learning for undersampled k-space to turn fewer measurements into faster scans without sacrificing diagnostic fidelity.

[ 03 · ANALYSIS ]

AI-Driven Processing

Our AI-driven processing includes segmentation, artifact correction, and quantitative parameter mapping to extract clinically and scientifically meaningful measurements from reconstructed images.

Core problem

From raw k-space to reconstructed signal

Every MR image begins as a sparse and noisy sampling of frequency space. While classical reconstruction methods fill in unmeasured data using fixed mathematical priors, our models learn these priors directly from data and physical laws. This approach recovers underlying structures using significantly fewer samples and enables much faster scanning times.

Focus areas

Research highlights

High-Fidelity Rapid Quantitative MRI figure

RA·1

Rapid Quantitative MRI with High-Fidelity

We focus on quantitative relaxometry mapping featuring tailored sequences designed jointly with their reconstruction networks. This methodology shortens scan times while maintaining high quantitative accuracy.

qMRIrelaxometryquantitative biomarker
Physics-Informed & Self-Supervised Learning figure

RA·2

Physics-Informed & Self-Supervised Learning

By embedding the MR signal equation and scanner physics directly into network architectures and loss functions, we build data-efficient and highly generalizable models.

Bloch simulationphysics-informed ML
High-Resolution Diffusion MRI figure

RA·3

High-Resolution Diffusion MRI

We apply distortion-corrected acquisition and network-based signal modeling to diffusion-weighted MRI to target microstructural and connectivity biomarkers.

dMRIdistortion correctionmicrostructure
Automatic Diagnosis of Brain Disorders figure

RA·4

Automatic Diagnosis of Brain Disorders

We develop comprehensive deep learning pipelines for the automatic detection, segmentation, and grading of brain tumors and other structural brain disorders. These tools incorporate explainable AI to actively support the clinical decision-making of radiologists.

tumor detectionsegmentationexplainable AI

Journal articles

Publications

20+ publications · 1300+ citations · h-index 15 · FWCI 2.86

View full publication list on Google Scholar →
2026

PRIME: Phase Reversed Interleaved Multi-Echo acquisition enables highly accelerated distortion-corrected diffusion MRI

Y Jun*, Q Liu, T Gong, J Cho, S Fujita, X Yong, C Liao, ME Schmidt, S Nasr, C Jaimes, MS Gee, SY Huang, L Ning, A Yendiki, Y Rathi, B Bilgic — Medical Image Analysis, 111:104058

2026

Deep learning in fetal, infant, and toddler neuroimaging research

JH Chin, MK Wyburd, V Ayzenberg, L Bayet, B Bilgic, EM Chen, Y Chen, Á Dineen, S Fujita, J Liu, Y Jun, MC Camacho, L Zöllei — Developmental Cognitive Neuroscience, 78:101680

2026

3D-QALAS synthetic MRI with Zero-DeepSub in children: initial experience including post-contrast imaging feasibility

SF Ferraciolli+,*, Y Jun+,*, SAV Vasquez, VP Trujillo, H Griffin, S Fujita, E Milshteyn, B Bilgic, C Jaimes — Pediatric Radiology, 56(4):867–877

2026

Multishot Dual Polarity GRAPPA: Robust Nyquist Ghost Correction for multishot EPI

Y Jiang, Y Jun, Q Liu, W Zhong, Y Rathi, H Guo, B Bilgic — Magnetic Resonance in Medicine, 95(5):2726–2736

2026

MIMOSA: Multi-parametric Imaging using Multiple-echoes with Optimized Simultaneous Acquisition for highly-efficient quantitative MRI

Y Chen, Y Jun, A Heydari, X Yong, J Kim, J Lee, H Liu, H Ye, B Gagoski, S Fujita#, B Bilgic# — Magnetic Resonance in Medicine, 95(3):1528–1544

2025

A Tutorial on MRI Reconstruction: From Modern Methods to Clinical Implications

T Çukur, SUH Dar, VA Nezhad, Y Jun, TH Kim, S Fujita, B Bilgic — IEEE Transactions on Biomedical Engineering, 73(5):1900–1920

2025

Vendor-agnostic 3D multiparametric relaxometry improves cross-platform reproducibility

S Fujita, B Gagoski, JF Nielsen, M Zaitsev, Y Jun, J Cho, X Yong, Q Uhl, P Xu, E Milshteyn, S Imam, Q Liu, Q Chen, O Afacan, JE Kirsch, Y Rathi, B Bilgic — Magnetic Resonance in Medicine, 94(3):937–948

2025

Beyond the Conventional Structural MRI: Clinical Application of Deep Learning Image Reconstruction and Synthetic MRI of the Brain

Y Choi, JS Ko, JE Park, G Jeong, M Seo, Y Jun, S Fujita, B Bilgic — Investigative Radiology, 60(1):27–42

2024

Zero-DeepSub: Zero-Shot Deep Subspace Reconstruction for Rapid Multiparametric Quantitative MRI Using 3D-QALAS

Y Jun*, Y Arefeen, J Cho, S Fujita, X Wang, PE Grant, B Gagoski, C Jaimes, MS Gee#, B Bilgic# — Magnetic Resonance in Medicine, 91(6):2459–2482

2023

SSL-QALAS: Self-Supervised Learning for Rapid Multiparameter Estimation in Quantitative MRI Using 3D-QALAS

Y Jun*, J Cho, X Wang, M Gee, PE Grant, B Bilgic#, B Gagoski# — Magnetic Resonance in Medicine, 90(5):2019–2032

2023

Deep learning referral suggestion and tumour discrimination using explainable artificial intelligence applied to multiparametric MRI

H Shin, JE Park, Y Jun, T Eo, J Lee, JE Kim, DH Lee, HH Moon, SI Park, S Kim, D Hwang, HS Kim — European Radiology, 33:5859–5870

2023

Intelligent Noninvasive Meningioma Grading with a Fully Automatic Segmentation using Interpretable Multiparametric Deep Learning

Y Jun+, YW Park+, H Shin+, Y Shin, JR Lee, K Han, SS Ahn, SM Lim, D Hwang, SK Lee — European Radiology, 33(9):6124–6133

2022

Ultrathin crystalline-silicon-based strain gauges with deep learning algorithms for silent speech interfaces

T Kim+, Y Shin+, K Kang+, K Kim+, G Kim+, Y Byeon+, H Kim, Y Gao, JR Lee, G Son, T Kim, Y Jun, J Kim, J Lee, S Um, Y Kwon, BG Son, M Cho, M Sang, J Shin, K Kim, J Suh, H Choi, S Hong, H Cheng, HG Kang*, D Hwang*, KJ Yu* — Nature Communications, 13:5815

2021

Results of the 2020 fastMRI Challenge for Machine Learning MR Image Reconstruction

MJ Muckley+, B Riemenschneider+, A Radmanesh, S Kim, G Jeong, J Ko, Y Jun, H Shin, D Hwang, M Mostapha, S Arberet, D Nickel, Z Ramzi, P Ciuciu, JL Starck, J Teuwen, D Karkalousos, C Zhang, A Sriram, Z Huang, N Yakubova, YW Lui, F Knoll — IEEE Transactions on Medical Imaging, 40(9):2306–2317

2020

The Latest Trends in Attention Mechanisms and Their Application in Medical Imaging

H Shin, J Lee, T Eo, Y Jun, S Kim, D Hwang — Journal of the Korean Society of Radiology, 81(6):1305–1333

2020

Accelerating Cartesian MRI by domain-transform manifold learning in phase-encoding direction

T Eo+, H Shin+, Y Jun, T Kim, D Hwang — Medical Image Analysis, 63:101689

2019

Parallel imaging in time-of-flight magnetic resonance angiography using deep multistream convolutional neural networks

Y Jun, T Eo, H Shin, T Kim, HJ Lee, D Hwang — Magnetic Resonance in Medicine, 81(6):3840–3853

2019

Megahertz-wave-transmitting conducting polymer electrode for device-to-device integration

T Kim, G Kim, H Kim, HJ Yoon, T Kim, Y Jun, TH Shin, S Kang, J Cheon, D Hwang, BW Min, W Shim — Nature Communications, 10:653

2018

Deep-learned 3D black-blood imaging using automatic labelling technique and 3D convolutional neural networks for detecting metastatic brain tumors

Y Jun, T Eo, T Kim, H Shin, D Hwang, SH Bae, YW Park, HJ Lee, BW Choi, SS Ahn — Scientific Reports, 8:9450

2018

KIKI-net: cross-domain convolutional neural networks for reconstructing undersampled magnetic resonance images

T Eo, Y Jun, T Kim, J Jang, HJ Lee, D Hwang — Magnetic Resonance in Medicine, 80(5):2188–2201

2017

High-SNR multiple T2(*)-contrast magnetic resonance imaging using a robust denoising method based on tissue characteristics

T Eo, T Kim, Y Jun, H Lee, SS Ahn, DH Kim, D Hwang — Journal of Magnetic Resonance Imaging, 45(6):1835–1845

Who we are

Team

Yohan Jun PI

Yohan Jun, Ph.D.

Assistant Professor · Principal Investigator, PRIME Lab

Dr. Yohan Jun leads the research at PRIME Lab, situated at the intersection of MR physics and machine learning. His extensive background spans pulse sequence development, inverse problems in image reconstruction, and deep learning applications for medical imaging.

Education

  • Ph.D. in Electrical & Electronic Engineering, Yonsei University (2022)
  • B.S. in Electrical & Electronic Engineering, Yonsei University (2016)

Career

  • Assistant Professor, Department of Convergence Medicine, Korea University College of Medicine (2026–Present)
  • Instructor & Faculty Member in Radiology, Harvard Medical School and Investigator, Martinos Center for Biomedical Imaging, Massachusetts General Hospital (2024–2026)
  • Postdoctoral Research Fellow, Martinos Center for Biomedical Imaging, MGH, Harvard Medical School (2022–2024)
  • Research Assistant, Medical Artificial Intelligence Lab, Yonsei University (2016–2022)

Now recruiting

PRIME Lab is actively seeking highly motivated students to join our team. The following positions are currently open.

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Open Position

PhD Student

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Open Position

MS Student

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Open Position

Undergraduate Researcher

Updates

News

2026.08

PRIME Lab is recruiting PhD and MS students — see Join the Lab below.

2026.08

PRIME Lab established in the Department of Convergence Medicine at Korea University College of Medicine.

2026.06

Our PI's first-authored paper introducing PRIME, a framework for highly accelerated and distortion-corrected diffusion MRI, has been published in Medical Image Analysis.

2026.05

Our PI was awarded the 2026 MGB Radiology Innovation Award by Massachusetts General Brigham.

2026.04

A collaborative review on deep learning in fetal, infant, and toddler neuroimaging research has been published in Developmental Cognitive Neuroscience.

2026.02

Our co-first-authored paper on the clinical feasibility of 3D-QALAS synthetic MRI combined with Zero-DeepSub in pediatric patients has been published in Pediatric Radiology.

2025.10

Our work on MIMOSA, an optimized sequence for highly efficient multi-parametric quantitative MRI, has been published in Magnetic Resonance in Medicine.

2025.10

Our team's comprehensive tutorial on modern MRI reconstruction methods and their clinical implications has been published in IEEE Transactions on Biomedical Engineering.

2025.09

Our team's work demonstrating how vendor-agnostic 3D multiparametric relaxometry improves cross-platform reproducibility has been published in Magnetic Resonance in Medicine.

2025.01

A collaborative review evaluating the clinical applications of deep learning image reconstruction and synthetic MRI of the brain has been published in Investigative Radiology.

2024.11

Our PI was promoted to Instructor and Faculty Member at the Martinos Center, MGH, and HMS.

2024.06

Our PI's first-authored paper presenting Zero-DeepSub, a zero-shot deep subspace reconstruction method for rapid quantitative MRI, has been published in Magnetic Resonance in Medicine.

2024.05

Our PI was named an ISMRM Junior Fellow.

2024.05

Our PI's work was awarded 1st Place for Best Oral Presentation by the Diffusion Study Group at the 2024 ISMRM Annual Meeting.

2024.05

Our PI's research was recognized at the 2024 ISMRM Meeting as an Annual Meeting Program Committee (AMPC) Selected Abstract, placing it in the top 1% of submissions.

2024.05

Our PI received the ISMRM Summa Cum Laude award for work presented at the 2024 ISMRM Annual Meeting.

2023.11

Our PI's first-authored paper detailing SSL-QALAS, a self-supervised learning approach for rapid multiparameter estimation, has been published in Magnetic Resonance in Medicine.

2022–2023

Our PI was recognized as a Distinguished Reviewer for IEEE Transactions on Medical Imaging (IEEE TMI).

2023.05

Our PI received the ISMRM Summa Cum Laude award for work presented at the 2023 ISMRM Annual Meeting.

Gallery

Photos

Lab space / 7T scanner site
[PRIME Lab established at Korea Univ. College of Medicine]
MICCAI 2025 — conference dinner
[We moved from Martinos Center (Boston, MA) to PRIME Lab.]

Recruiting

Join the lab

We are looking for postdoctoral fellows, graduate students, and researchers who are eager to work across the full imaging stack, spanning from sequence physics to deep learning algorithms. A background in any of the following areas will serve as a strong starting point.

Email the PI →
  • Postdoctoral fellows, MS, or PhD students in Biomedical Engineering, Electrical Engineering, or Computer Science
  • A solid background in signal processing, applied mathematics, or physics
  • Hands-on experience with PyTorch or similar deep learning frameworks
  • A strong curiosity about MRI physics (no prior MRI experience is required)
  • Undergraduate research assistant positions are available year-round

Location & Inquiries

Contact

PRIME Lab

Precision MRI Research Center
Chung Mong-Koo Future Medicine Building
Korea University Medi-Science Park
161 Jeongneung-ro, Seongbuk-gu, Seoul, Republic of Korea

정몽구 미래의학관 MRI정밀영상연구센터
고려대학교 메디사이언스파크
서울 성북구 정릉로 161

Email:
yohanjun (at) korea (dot) ac (dot) kr